## [1] "endothelial" "epithelial" "immune" "mesenchymal"
## [1] "Endothelial" "Epithelial" "Mesenchymal" "Myeloid" "NK_cells"
## [6] "Other_immune" "T_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Tc_cells" "Th_cells" "Epithelial_1" "Epithelial_10"
## [9] "Epithelial_2" "Epithelial_3" "Epithelial_4" "Epithelial_5"
## [13] "Epithelial_6" "Epithelial_7" "Epithelial_8" "Epithelial_9"
## [17] "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [9] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [13] "Epithelial_8" "Epithelial_9" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [1] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [5] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [9] "Epithelial_8" "Epithelial_9"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "endothelial"
## [6] "mesenchymal"
## [1] "endothelial" "epithelial" "immune" "mesenchymal"
## [1] "Endothelial" "Epithelial" "Mesenchymal" "Myeloid" "NK_cells"
## [6] "Other_immune" "T_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Tc_cells" "Th_cells" "Epithelial_1" "Epithelial_10"
## [9] "Epithelial_2" "Epithelial_3" "Epithelial_4" "Epithelial_5"
## [13] "Epithelial_6" "Epithelial_7" "Epithelial_8" "Epithelial_9"
## [17] "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [9] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [13] "Epithelial_8" "Epithelial_9" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [1] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [5] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [9] "Epithelial_8" "Epithelial_9"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "endothelial"
## [6] "mesenchymal"
## [1] "endothelial" "epithelial" "immune" "mesenchymal"
## [1] "Endothelial" "Epithelial" "Mesenchymal" "Myeloid" "NK_cells"
## [6] "Other_immune" "T_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Tc_cells" "Th_cells" "Epithelial_1" "Epithelial_10"
## [9] "Epithelial_2" "Epithelial_3" "Epithelial_4" "Epithelial_5"
## [13] "Epithelial_6" "Epithelial_7" "Epithelial_8" "Epithelial_9"
## [17] "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [5] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [9] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [13] "Epithelial_8" "Epithelial_9" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells"
## [1] "Epithelial_1" "Epithelial_10" "Epithelial_2" "Epithelial_3"
## [5] "Epithelial_4" "Epithelial_5" "Epithelial_6" "Epithelial_7"
## [9] "Epithelial_8" "Epithelial_9"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "Tc_cells"
## [6] "Th_cells" "endothelial" "mesenchymal"
## [1] "Myeloid" "NK_cells" "Other_immune" "T_cells" "endothelial"
## [6] "mesenchymal"
## Total number of cells: 1721027
## Rh Negative number of cells: 111593
## Rh Positive number of cells: 1609434
## % of cells presumably lost in previous analysis: 93.51591 %
##
## endothelial epithelial immune mesenchymal
## 1.710607 47.305068 29.614004 21.370321
##
## Myeloid NK_cells Other_immune T_cells Tc_cells
## 4.414399 1.943258 14.041209 6.705241 1.100971
## Th_cells Epithelial_1 Epithelial_10 Epithelial_2 Epithelial_3
## 1.408926 9.235706 2.483750 2.696878 6.562709
## Epithelial_4 Epithelial_5 Epithelial_6 Epithelial_7 Epithelial_8
## 1.325023 6.058185 7.575302 4.071058 6.303271
## Epithelial_9 endothelial mesenchymal
## 0.993186 1.710607 21.370321
##
## Myeloid NK_cells Other_immune T_cells Epithelial_1
## 4.414399 1.943258 14.041209 9.215137 9.235706
## Epithelial_10 Epithelial_2 Epithelial_3 Epithelial_4 Epithelial_5
## 2.483750 2.696878 6.562709 1.325023 6.058185
## Epithelial_6 Epithelial_7 Epithelial_8 Epithelial_9 endothelial
## 7.575302 4.071058 6.303271 0.993186 1.710607
## mesenchymal
## 21.370321
##
## Endothelial Epithelial Mesenchymal Myeloid NK_cells Other_immune
## 1.710607 47.305068 21.370321 4.414399 1.943258 14.041209
## T_cells
## 9.215137
##
## endothelial epithelial immune mesenchymal
## 1.536835 24.675383 48.145493 25.642289
##
## Myeloid NK_cells Other_immune T_cells Tc_cells
## 13.2526234 1.6846935 5.9708046 3.2591650 10.9057020
## Th_cells Epithelial_1 Epithelial_10 Epithelial_2 Epithelial_3
## 13.0725045 0.3450037 0.6891113 0.8898408 1.8881113
## Epithelial_4 Epithelial_5 Epithelial_6 Epithelial_7 Epithelial_8
## 0.7491509 3.4132965 0.1155986 5.1983547 3.5073885
## Epithelial_9 endothelial mesenchymal
## 7.8795265 1.5368347 25.6422894
##
## Myeloid NK_cells Other_immune T_cells Epithelial_1
## 13.2526234 1.6846935 5.9708046 27.2373715 0.3450037
## Epithelial_10 Epithelial_2 Epithelial_3 Epithelial_4 Epithelial_5
## 0.6891113 0.8898408 1.8881113 0.7491509 3.4132965
## Epithelial_6 Epithelial_7 Epithelial_8 Epithelial_9 endothelial
## 0.1155986 5.1983547 3.5073885 7.8795265 1.5368347
## mesenchymal
## 25.6422894
##
## Endothelial Epithelial Mesenchymal Myeloid NK_cells Other_immune
## 1.536835 24.675383 25.642289 13.252623 1.684693 5.970805
## T_cells
## 27.237372
##
## endothelial epithelial immune mesenchymal
## 1.722655 48.874138 28.329090 21.074117
##
## Myeloid NK_cells Other_immune T_cells Tc_cells
## 3.8015849 1.9611864 14.6007851 6.9441804 0.4211418
## Th_cells Epithelial_1 Epithelial_10 Epithelial_2 Epithelial_3
## 0.6002110 9.8521592 2.6081840 2.8221723 6.8868310
## Epithelial_4 Epithelial_5 Epithelial_6 Epithelial_7 Epithelial_8
## 1.3649519 6.2415731 8.0925344 3.9928944 6.4971288
## Epithelial_9 endothelial mesenchymal
## 0.5157092 1.7226553 21.0741167
##
## Myeloid NK_cells Other_immune T_cells Epithelial_1
## 3.8015849 1.9611864 14.6007851 7.9655332 9.8521592
## Epithelial_10 Epithelial_2 Epithelial_3 Epithelial_4 Epithelial_5
## 2.6081840 2.8221723 6.8868310 1.3649519 6.2415731
## Epithelial_6 Epithelial_7 Epithelial_8 Epithelial_9 endothelial
## 8.0925344 3.9928944 6.4971288 0.5157092 1.7226553
## mesenchymal
## 21.0741167
##
## Endothelial Epithelial Mesenchymal Myeloid NK_cells Other_immune
## 1.722655 48.874138 21.074117 3.801585 1.961186 14.600785
## T_cells
## 7.965533
##
## Attaching package: 'dplyr'
## The following objects are masked from 'package:stats':
##
## filter, lag
## The following objects are masked from 'package:base':
##
## intersect, setdiff, setequal, union
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables
## Using pt_ID, CANARY, CD90, cell_type, subtype, subtype2, subtype3 as id variables